SoftwareInstallationTable

Num	Name	Date install/By	ThisVer	PrevVer	FOSS or commercial	Class	Module or path (A = /afs/cad)	Update freq	Comments	Record date
1	Abinit	2018-04-12/gw	8.6.3	New	FOSS	CH	abinit/8.6.3	As needed		26Apr18-13:31
2	Comsol	2016-08-03/gw	52a	52	commercial	CH	comsol/52a	by request		22Aug16-11:53
3	Cplex	2017-11-17/gw	12.7.1	New	commercial	MA	cplex/12.7.1	As needed		26Apr18-13:38
4	Gaussian	2017-11-16/gw	g16	g09	commercial	CH	A/linux/gaussian/g16	On request	uPurchased by Bozzelli	26Apr18-13:53
5	Intel Parallel Studio Cluster Edition	2017-03-30/gw	2017.0	2016.4	commercial	COMP,IDE,DBG	intel/compiler/2017.2.174	6 mos	include inspector, advisor, and vtune_amplifier	26Apr18-12:09
6	Intel Parallel Studio Cluster Edition	2017-05-02/gw	2016.4	2016.0	commercial	COMP,IDE,DBG	intel/compiler/2016.4.258	6 mos	include inspector, advisor, and vtune_amplifier	26Apr18-12:09
7	Intel Parallel Studio Cluster Edition	2017-12-13/gw	2018.1	2017.0	commercial	COMP,IDE,DBG	intel/compiler/2018.1.163	6 mos	include inspector, advisor, and vtune_amplifier	26Apr18-12:09
8	Intel Parallel Studio Cluster Edition	2018-03-22/gw	2018.2	2018.1	commercial	COMP,IDE,DBG	intel/compiler/2018.2.199	6 mos	include inspector, advisor, and vtune_amplifier	26Apr18-12:09
9	Intel Parallel Studio Cluster Edition	2018-05-31/gw	2018.3	2018.2	commercial	COMP,IDE,DBG	intel/compiler/2018.3.222	On new release	include inspector, advisor, and vtune_amplifier	31May18-11:33
10	Ipopt	2015-06-15/gw	3.11.7	new	FOSS	MA	ipopt/3.11.7	As needed		26Apr18-14:13
11	Ipopt	2018-04-13/gw	3.12.9	3.11.7	FOSS	MA	ipopt/3.11.7	As needed	Compiled matlab interface	26Apr18-14:13
12	Matlab	03/26/2018-gwolosh	2018a	2016a	commercial	MA	matlab/2018a	6mo	None	26Apr18-11:29
13	Mono	2017-12-19/gw	5.11.0.49	New	FOSS	COMP	mono/5.11.0.49	On request		26Apr18-14:23
14	MySQL	2015-01-10/rgaine	5.5.29	5.0.37	FOSS	DB	mysql	12 months	NONE	2015-10-27
15	NVidia Cuda Toolkit	2017-05-01/gw	8.0.61	6.5.14	commercial	COMP	cuda/8.0.61	12 Months		26Apr18-13:44
16	NVidia Cuda Toolkit	2018-05-11/gw	9.0.176	8.0.61	commercial	COMP	cuda/9.0.176	12 Months		11May18-12:22
17	Name	Date installed/By	This version	Previous version	FOSS or commercial	Class	Module or path	Update freq	Comments	31May18-15:42
18	NeMo	2015-02-29/gw	0.7.2	New	FOSS	NNS	NeMo	As needed	for bipin, srk68	08Mar16-10:37
19	Neuron	2015-11-05/gw	7.4	New	FOSS	NNS	neuron/7.4	As needed		26Apr18-14:31
20	Openblas	2015-05-18/gw	0.2.14	0.2.13	FOSS	LIB	openblas/0.2.14/gnu4/Nehalem	As needed		26Apr18-14:41
21	OraClient	2015-01-18/rgaine	12.1.0.2.0	11.2.0.1.0	commercial-12c	DB	oraclient-12c	12 months	NONE	2015-10-27
22	Oracle	2015-01-10/rgaine	12.1.0.2.0	11.2.0.1.0	commercial	DB	oraclient-12c	12 months	NONE	2015-10-27
23	PGI Compilers	2018-01-02/gw	17.10	new	commercial	COMP	PrgEnv-pgi/17.10	On request		26Apr18-13:16
24	Python	04/16/2018-gwolosh	2.7.14	NA	FOSS	LANG	intel/python/intelpython2	6 months	Optimized Python compiled by Intel	26Apr18-11:12
25	Python	04/16/2018-gwolosh	3.6.3	NA	FOSS	LANG	intel/python/intelpython3	6 months	Optimized Python compiled by Intel	26Apr18-11:12
26	Quantum Espresso	2016-12-02/gw	6.0	New	FOSS	CH	qe/6.0	On request		26Apr18-13:22
27	R	2015-03-17/gw	3.2.4	3.1.2	FOSS	LANG	/afs/cad/linux/R-3.2.4	12 months		22Mar16-12:52
28	R	2017-12-20/gw	3.4.3	3.2.4		FOSS	LANG	/afs/cad/linux/R-3.4.3	12 months
29	R	2018-05-17/gw	3.5.0	3.4.3	FOSS	LANG	/afs/cad/linux/R-3.5.0	12 months		17May18-13:52
30	SAS	2016-09-16	9.4	9.3	commercial	MA	sas/9.4	Upon new release	Comments	16Sep16-10:44
31	SPM	2016-06-15/gw	12	8	FOSS	MTOOL	A/sw.common/matlab-toolboxes-3rd-party/spm12	As needed	Matlab version 2016a	19Jul16-14:49
32	Siesta	2016-11-02/gw	4.1-b1	New	FOSS	CH	siesta/4.1-b1	By Request	Comments	02Nov16-13:01
33	Synposys CustomExplorer	2016-09-22/gw	L-2016.06-SP1	G-2012	commercial	EE	synopsys/customexplorer/L-2016.06-SP1	By request	Used for course - Durga Misra	22Sep16-11:29
34	Synposys FPGA Design	2016-09-22/gw	L-2016.09	G-2012	commercial	EE	synopsys/fpga/L-2016.09	By request	Used for course - Durga Misra	22Sep16-11:29
35	Synposys Hspice	2016-09-22/gw	L-2016.06-SP1	G-2012	commercial	EE	synopsys/hspice/L-2016.06-SP1	By request	Used for course - Durga Misra	22Sep16-11:29
36	Synposys IC Compiler	2016-09-22/gw	L-2016.03-SP4	G-2012	commercial	EE	synopsys/icc/L-2016.03-SP4	By request	Used for course - Durga Misra	22Sep16-11:29
37	Synposys Identify RTL Debugger	2016-09-22/gw	L-2016.09	G-2012	commercial	EE	synopsys/identify/L-2016.09	By request	Used for course - Durga Misra	22Sep16-11:29
38	Synposys PrimeTime	2016-09-22/gw	L-2016.06-SP2	G-2012	commercial	EE	synopsys/primetime/L-2016.06-SP2	By request	Used for course - Durga Misra	22Sep16-11:29
39	Synposys TCAD Sentaurus	2016-09-22/gw	L-2016.03-SP2	G-2012	commercial	EE	synopsys/tcad/sentaurus/L-2016.03-SP2	By request	Used for course - Durga Misra	22Sep16-11:29
40	Synposys TCAD Taurus Medici	2016-09-22/gw	L-2016.03	G-2012	commercial	EE	synopsys/tcad/taurus_medici/L-2016.03	By request	Used for course - Durga Misra	22Sep16-11:29
41	Synposys TCAD Taurus TSuprem4	2016-09-22/gw	L-2016.03	G-2012	commercial	EE	synopsys/tcad/taurus_tsuprem4/L-2016.03	By request	Used for course - Durga Misra	22Sep16-11:29
42	Tecplot 360EX	2016-07-28/gw	2016-R2	2013	commercial	CFD	tecplot/360ex/2016R2	6 mos	Comments	28Jul16-15:03
43	Tecplot 360EX	2018-05-31/gw	2018-R1	2016-R2	commercial	CFD	tecplot/360ex/2018R1	12 mos	Comments	31May18-15:25
44	Tecplot Chorus	2016-07-28/gw	2016-R1	New	commercial	CFD	tecplot/chorus/2016R1	6 mos	Comments	28Jul16-15:03
45	Tecplot Chorus	2016-09-01/gw	2016-R2	2016-R1	commercial	CFD	tecplot/chorus/2016R2	6 mos	Comments	01Sep16-13:33
46	Tecplot Chorus	2018-05-31/gw	2018-R1	2016-R1	commercial	CFD	tecplot/chorus/2018R1	12 mos	Comments	31May18-15:25
47	Tecplot Focus	2016-07-28/gw	2016-R2	New	commercial	CFD	tecplot/focus/2016R2	6 mos	Comments	28Jul16-15:03
48	Tecplot RS	2016-07-28/gw	2015-R1	New	commercial	CFD	tecplot/rs/2015R1	6 mos	Comments	28Jul16-15:03
49	Tecplot RS	2018-05-31/gw	2017-R1	2015-R1	commercial	CFD	tecplot/rs/2017R1	12 mos	Comments	31May18-15:25
50	Texlive	2018-04-29/gw	2018	new	FOSS	TP	texlive/2018	12 months		29Apr18-02:45
51	active-perl	2015-10-30/gw	5.18.4.1805	new	FOSS	Lang	perl	6 mos		15Dec15-13:50
52	afni	2015-12-16/dp	15.12	14.93	FOSS	BIOMED	afni/15.12	as avaialble		16Dec15-07:59
53	anaconda2	2015-02-15/gw	2.10	new	FOSS	LANG	python2	As needed	python 2.7 distribution	2015-09-15
54	anaconda3	2016-08-01/dp	3.5.2	new	FOSS	LANG	python3	As needed	python 3 distribution	2016-09-12
55	anaconda3.6	09/02/2018	3.6	3.5	FOSS	LANG	python3.6	as needed	None	08Apr18-16:30
56	ansys	2015-08-12/mt	16.2	15.0	commercial	CFD FEA	fluent-15.0	on new release		2015-09-15
57	ansys	2016-06-04/gw	19.1	18.1	commercial	CFD FEA	ansys/19.1, fluent/19.1.0	on new release	Also includes Fluent software	04Jun18-11:35
58	ansys	2016-06-22/gw	17.1	16.2	commercial	CFD FEA	ansys/17.1, fluent/17.1	on new release	Also include Fluent software	31May18-15:25
59	ansys	2017-08-23/gw	18.1	17.1	commercial	CFD FEA	ansys/18.1, fluent/18.1	on new release	Also include Fluent software	31May18-15:25
60	apache	2015-05-13/dp	2.4.12	2.4.6	FOSS	WEBS	A/linux/apache-2.4.12_php-5.6.8	6 months		2015-09-15
61	blast	2015-11-24/gw	2.2.31+	new	FOSS	BIOSC	A/linux/blast/2.2.31+	As needed		2015-11-24
62	boost	2016-02-23/dp	1.60	1.57	FOSS	LIB	A/linux/boost-1.60-sl6/lib	on new release	SL6	23Feb16-12:52
63	boost	2016-02-23/dp	1.60	1.57	FOSS	LIB	A/linux/boost-1.60-sl7/lib	on new release	SL7	23Feb16-12:52
64	bowtie2	2017-11-15/dp	2.3.3.1	2-2.2.5	FOSS	BIOINFO	bowtie/2.3.3.1	As needed	None	16Nov17-08:08
65	caffe	2016-03-30/gw	local	new	FOSS	ML	caffe/local	As needed	built from local tree (no version number)	20Apr16-12:35
66	casa	11-Feb-16/dp	4.5.1	None	FOSS	RA	casa	upon new release	For Bin Chen, Physics	11Feb16-10:17
67	cmake	2015-01-20/gw	3.1.0	2.8.x	FOSS	UT	cmake	6 months		2015-09-15
68	drush	2016-04-28/dp	8.1.0	from 2011	FOSS	DU	+utils drush	6 months	For M. Bieber project	29Apr16-15:09
69	eclipse-luna	2015-09-01/dp	4.4	4.3.2	FOSS	IDE	eclipse/4.4	6 months		2015-09-15
70	eclipse-neon	2016-09-14/dp	4.6	4.4	FOSS	IDE	eclipse/4.6	6 months		2016-09-15
71	eclipse-oxygen-C/C++	2017-09-11/dp	4.7		FOSS	IDE	C.eclipse/4.7	6 months		20Sep17-14:38
72	eclipse-oxygen-java	2017-09-11/dp	4.7	4.6	FOSS	IDE	eclipse/4.7	6 months		20Sep17-14:38
73	exonerate	2015-03-02/gw	2.2.0	New	FOSS	BIOINFO	exonerate	As needed	for usman, lz25	08Mar16-10:37
74	firefox	12/04/2018-davidp	59.0.2	57.0.3	FOSS	WEBB	firefox/59.0.2	as needed	None	12Apr18-12:30
75	firefox	2015-09-02/dp	40.0.3	38.0.1	FOSS	WB	A/sw.common/bin/firefox	on new release	new release almost every week !	2015-09-15
76	firefox	2018-01-02/dp	57.0.3	57.0	FOSS	WB	Module	As needed	None	16Nov17-08:34
77	freefem++	2015-05-15/gw	3.37-1	new	FOSS	Lang	freefem++-sl6	As needed		15Dec15-13:50
78	freerdp-2.0.0-rc2	11/04/2018-davidp	2.0.0-rc2	unknown	FOSS	XU	freerdp-2.0.0	as needed	None	11Apr18-16:28
79	freesurfer	05/04/2014-davidp	5.3.0	FOSS	FOSS	MRI	freesurfer/5.3.0	as needed	None	08Jun18-10:34
80	freesurfer	08/06/2018-davidp	6.0.0	5.3.0	FOSS	MRI	freesurfer/6.0.0	as needed	None	09Jun18-10:00
81	fsl	2016-08-09/gw	5.0.9	new	FOSS	IA	fsl/5.0.9	By request		22Aug16-11:38
82	gcc	2016-07-19/gw	5.3.0	5.3.0	FOSS	COMP	gcc/5.3.0	on new release	SL7/SL6	19Jul16-14:49
83	gcc	2016-07-19/gw	5.4.0	5.3.0	FOSS	COMP	gcc/5.4.0	on new release	SL7/SL6	19Jul16-14:49
84	gcc	2016-07-19/gw	6.1.0	5.3.0	FOSS	COMP	gcc/6.1.0	on new release	SL7/SL6	19Jul16-14:49
85	gcc	2018-05-10/gw	7.3.0	6.1.0	FOSS	COMP	gcc/7.3.0	on new release	SL7/SL6	10May18-14:17
86	gcc5	2015-09-20/dp	5.2.0	4.9.2	FOSS	LANG	gcc5/5.2.0	on new release	built with gcc-4.4.7	2015-09-15
87	gcc5	2016-02-22/dp	5.3.0	5.2.0	FOSS	COMP	gcc5/5.3.0	on new release	SL6	23Feb16-07:19
88	gcc5	2016-02-22/dp	5.3.0	5.2.0	FOSS	COMP	gcc5/5.3.0-SL7	on new release	SL7	23Feb16-07:19
89	gflags	2016-03-30/gw	2.2.0	new	FOSS	UT	gflags/2.2.0	As needed	needed for caffe installation	20Apr16-12:35
90	glog	2016-03-30/gw	0.3.4	new	FOSS	UT	glog/0.3.4	As needed	needed for caffe installation	20Apr16-12:35
91	go	2016-10-14/dp	1.7.1	None	FOSS	LANG	go	upon new release	none	14Oct16-14:18
92	gromacs	2016-02-02/gw	5.1.1	4.6.3	FOSS	CH	gromacs/5.1.1	12 months	Built with intel compilers/mkl	19Feb16-10:23
93	hdf5	2016-03-30/gw	1.10.0	new	FOSS	UT	hdf5/1.10.0	As needed	needed for caffe installation	20Apr16-12:35
94	hdf5	2018-01-11/gw	1.10.1	new	FOSS	UT	hdf5/pgi-17.10/1.10.1	As needed	Compiled using PGI compilers	26Apr18-14:04
95	hdf5_parallel	2017-02-16/gw	1.10.0	new	FOSS	UT	hdf5_parallel/1.10.0-patch1	As needed	Requested by user	26Jun17-14:39
96	hdf5_parallel	2017-02-16/gw	1.8.18	new	FOSS	UT	hdf5_parallel/1.8.18	As needed	Requested by user	26Jun17-14:39
97	hdf5_parallel	2017-06-26/gw	1.8.19	1.8.8	FOSS	UT	hdf5_parallel/1.8.19	As needed	Requested by user	26Jun17-14:39
98	hdf5_parallel	2018-01-11/gw	1.10.1	new	FOSS	UT	hdf5_parallel/pgi-17.10/1.10.1	As needed	Compiled using PGI compilers	26Apr18-14:04
99	htcondor	2014-07-28/gw	8.2.1	8.0.6	FOSS	SCH	condor	As needed		2015-11-02
100	intel-2016	2015-09-11/gw	2016	9	commercial	COMP,IDE,DBG	A/linux/intel/2016	6 months		2015-11-24
101	java8	2018-01-08/dp	u151	u144	FOSS	LANG	jav8/1.5,1	per semester		08Jan18-16:46
102	java9	2018-01-08/dp	9.0.1		FOSS	LANG	jav9/9.0.1	per semester		08Jan18-16:46
103	jgrasp	2018-01-08/dp	2.0.4_03	2.0.4_01	FOSS	IDE	A/sw.common/bin/jgrasp	per semester	Comments	08Jan18-16:35
104	julia	2016-09-20/dp	0.5.0	0.1.0	FOSS	LANG	julia	as available		20Sep16-14:40
105	jython	2016-10-10/gw	2.7.0	New	FOSS	LANG	jython/2.7.0	12 months	java8/anaconda python 2.7	10Oct16-11:52
106	kentUtils	2015-10-09/gw	302	New	FOSS	BIOSC	A/linux/kentutils/302	As needed		2015-10-09
107	krenew, k5start	2016-10-17/dp	4.2	4.1	FOSS	KRBU	A/linux/kstart-4.2	as available	None	17Oct16-12:31
108	lammps	2016-09-28/gw	30Jul16	14.5	FOSS	CH	lammps/[cpu,gpu]/30Jul16	12 Months or by request	Comments	28Sep16-09:39
109	liblpng-1.5.23 (aka libpng15)	2015-11-11/dp	1.5.23	None	FOSS	LIB	/afs/cad/linux/libpng-1.5.23/	upon new release	Needed by PHPs built with libpng15.so, which has disappeated	12Nov15-07:58
110	libreoffice	12/04/2018-davidp	6.0.3	5.4.0	FOSS	OP	A/sw.common/bin/liboff	on new release	None	12Apr18-14:14
111	libreoffice	2017-08-29/dp	5.4.0	5.2.1	FOSS	OP	A/sw.common/bin/liboff	6 months		29Aug17-16:31
112	mathematica	2016-08-23/gw	11.0.0	10.3.1	commercial	MA	mathematica/11.0.0	upon new release	Comments	23Aug16-16:39
113	mathematica	2017-07-17/gw	11.1.1	11.0.0	commercial	MA	mathematica/11.1.1	upon new release	Comments	30May18-13:51
114	mathematica	2018-05-30/gw	11.3.0	11.1.1	commercial	MA	mathematica/11.3.0	upon new release	Comments	30May18-13:51
115	matlab	2015-06-04/mt	2015a	2014a	commercial	MA	matlab	on new release		2015-09-15
116	multimarkdown-4	2015-10-26/dp	4.7.1	None	FOSS	UT	A/linux/multimarkdown-4/bin/multimarkdown	on new release	symlink in /usr/local/bin	2015-10-26
117	needed	python 3 distribution	2016-09-12
118	node.js	2016-04-28/dp	6.0.0	0.10.33	FOSS	WEBD	node.js	6 months	For M. Bieber project	29Apr16-15:09
119	nwchem	2016-02-02/gw	6.6	None	FOSS	CH	nwchem/6.6	12 months	for Bozzelli	19Feb16-10:23
120	nwchem	2018-05-15/gw	6.8	6.6	FOSS	CH	nwchem/6.8	12 months	for Bozzelli	15May18-15:02
121	opencv	2016-04-05/dp	3.1.0	2.4.9	FOSS	IP	opencv/3.1.0	upon new release	None	06Apr16-15:15
122	openmpi	2016-02-08/gwolosh	2.0.0	1.8.4	FOSS	MPI	ompi/2.0.0	As needed	Compiled with gcc-6.1.0	02Aug16-11:48
123	openmpi	2018-05-10/gw	3.1.0	2.0.0	FOSS	MPI	ompi/3.1.0	As needed	Compiled with gcc-7.3.0	10May18-14:17
124	ovito	2017-02-25/dp	2.8.2	None	FOSS	VIZ	ovito	upon new reolease		02Mar17-12:56
125	paraview	2017-10-20/gw	5.4.1	New	FOSS	VIZ	paraview/5.4.1, paraview/kong/5.4.1	As needed	paraview/kong is for rendering on compute node	26Apr18-15:17
126	pcre	2017-12-20/gw	8.41	new	FOSS	LIB	pcre/8.41	As needed		26Apr18-14:59
127	petsc	2015-05-28/gw	3.5.4	new	FOSS LIB	A/linux/petsc/3.5.4	12 months
128	php	2015-05-13/dp	5.6.8	5.4.17	FOSS	LANG	A/linux/apache-2.4.12_php-5.6.8	6 months		2015-09-15
129	phpMyAdmin	2016-03-3/dp	4.5.5.1	4.2.7.1	FOSS	DBU	A/web/ucs/html/all_topics/Servers/MySQL/phpMyAdmin-4.5.5.1-all-languages	each semester	None	03Mar16-13:52
130	phpmyadmin	2014-08-19/dp	4.2.7.1	4.1.7	FOSS	DBU	A/web/ucs/html/topics/Servers/MySQL/phpMyAdmin-4.2.7.1-all-languages	as available at start of semester	None	24Nov15-07:51
131	protobuf	2016-04-04/gw	2.6.1	new	FOSS	UT	protobuf/2.6.1	As needed	needed for caffe installation	20Apr16-12:35
132	protobuf	2017-04-13/dp	2.5.0	2.6.1 (newer)	FOSS	UT	protobuf/2.5.0	As needed	for Tong Shu, Chase Wu, CS student	19Apr17-09:12
133	python	05/31/2018-davidp	3.6.4	3.6.3	FOSS	LANG	python3.6.tf	as needed	For icl1.hpcnet.campus; Nvidia K80 GPU	08Jun18-10:34
134	python3	2015-09-15/dp	3.5.0	3.4.0a1	FOSS	LANG	python3	6 months		2015-09-15
135	redis	2016-04-29/dp	3.0.7	None	FOSS	WEBD	redis	6 months	For M. Bieber project	29Apr16-15:09
136	ruby	2015-11-13/dp	2.2.3	2.0.0-p0	FOSS	LANG	/afs/cad/linux/ruby-2.2.3	upon new release	includes rails and other gems	13Nov15-15:07
137	silo	2017-04-18/dp	4.10.2		FOSS	VIZ	silo/4.10.2	As needed	requested by R. Voronov, ChemE	19Apr17-09:12
138	spss	2016-09-01/gw	24	22	commercial	MA	spss/24	12 mos	Comments	01Sep16-13:33
139	tcl	2015-09-15/dp	8.6.4	8.6.0	FOSS	LANG	python3	6 months		2015-09-15
140	tk	2015-09-15/dp	8.6.4	8.6.0	FOSS	LANG	python3	6 months		2015-09-15
141	tomcat	2013-09-19/dp	7.0.42	5.2	FOSS	SC	A/linux/apache-tomcat-7.0.42	6 months		2015-09-15
142	tomcat	2015-12-10/dp	7.0.65	7.0.42	FOSS	SC	A/linux/apache-tomcat-7.0.65	As needed		11Dec15-08:47
143	visit	2017-04-18/dp	2.10.2		FOSS	VIZ	visit/2.10.2	As needed	requested by R. Voronov, ChemE	19Apr17-09:12
144	visit	2017-04-18/dp	2.12.2		FOSS	VIZ	visit/2.12.2	As needed	requested by R. Voronov, ChemE	19Apr17-09:12

Classifications