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<div class="noautonum">__TOC__</div>
  
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* SEARCH
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==ForPNSFCCStar 29Jan21-08:58==
  
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* Phake I
+
== 1. Preamble ==
−
** HPC and BD | Welcome to HPC & BD
+
−
** UserAccess | Access
+
−
** AWSInstanceDeployment | AWS Instance Deployment
+
−
* Clusters
+
−
** Lochness | Lochness
+
−
** http://ist.njit.edu/cyberinfrastructure/hpckong.php | Kong
+
−
** http://ist.njit.edu/cyberinfrastructure/hpcstheno | Stheno
+
−
* Compilers
+
−
** CompilersGeneral | General
+
−
** Intel | Intel
+
−
* Consultation
+
−
** ScheduleAppt | Schedule an appointment to get help
+
−
* FAQ
+
−
** FAQ | FAQ
+
−
* GPU
+
−
** RunningCUDASamplesOnKong | Running CUDA Samples on Kong
+
−
** MatlabGPUOnStheno | Matlab GPU on Stheno
+
−
* Hardware Costs
+
−
** DiskAndBackupCost | Disk and Backup
+
−
** VMCost | Virtual Machine
+
−
** https://wiki.hpc.arcs.njit.edu/external/HPC_catalog-20140501-0858-AM-WIP.pdf | Node Catalog (outdated)
+
−
* HPC URLs
+
−
** HPCURLS | Useful URLs
+
−
* HTCondor
+
−
** HTCondor | Using HTCondor
+
−
* IST/ARCS Services
+
−
** ISTARCSServices | Services overview
+
−
* Lessons
+
−
** LessonsAndTutorials | Lessons and Tutorials
+
−
* Matlab Distributed Computing Server
+
−
** GettingStartedWithSerialAndParallelMATLABOnKongAndStheno | Getting Started with Serial and Parallel MATLAB on Kong and Stheno
+
−
** MatlabGPUOnStheno | Matlab GPU on Stheno
+
−
* News
+
−
** ReplacementOfKong | Replacement of Kong
+
−
* Outages
+
−
** Outage17Feb2016 | 17 Feb 2016
+
−
** Outage16Oct2018 | 15-16 Oct 2018
+
−
* Policies
+
−
** GITC4320 | GITC 4320 datacenter
+
−
** GuestAccounts | Guest Accounts
+
−
** MaxNumberOfJobsSubmitted | Maximum Number of Jobs Submitted
+
−
** PurgingOfScratchSpace | Purging of Scratch Space
+
−
** UseOfHeadnodes | Use of Headnodes
+
−
*  Python
+
−
** MinicondaUserMaintainedEnvs | Miniconda for User Maintained Python Environments
+
−
** Python2.7Packages | Python 2.7 Installed Packages
+
−
** Python3.5Packages | Python 3.5 Installed Packages
+
−
** Python3.6Packages | Python 3.6 Installed Packages
+
−
** Python3.6.tfPackages | Python 3.6.tf Installed Packages
+
−
** Python3.7Packages | Python 3.7 Installed Packages
+
−
* Researcher Resources
+
−
** HPCAndBDResources | HPC and BD Resources
+
−
** ResearcherBaseResources | Base Resource Allocations
+
−
* Researcher On-and-Off-Premise Resources
+
−
** ComputationalResourcesOnPremise | On-premise computational resources
+
−
** ComputationalResourcesOffPremise | Off-premise computational resources
+
−
* Researcher Problem Domains
+
−
** ResearcherProblemDomains | Classifications, Spring 2015
+
−
** https://wiki.hpc.arcs.njit.edu/external/surveys/spring2018/GeneralComp.pdf | Classifications, Spring 2018
+
−
* Researcher Symposia
+
−
** ResearcherSymposiumJan2017 | 11 January 2017
+
−
* Roadmap
+
−
** Roadmap | 18-month Roadmap
+
−
* Running Jobs
+
−
** SonOfGridEngine | SGE
+
−
** KongQueues | Kong Queues
+
−
** KongQueuesTable | Kong Queues Table
+
−
** SthenoQueues | Stheno Queues
+
−
** SthenoQueuesTable | Stheno Queues Table
+
−
** MPIOnHPCClusters | Using MPI
+
−
** UsingKrenew | Using krenew
+
−
** UsingKsub | Using ksub
+
−
** SpecifyResources | Specify Resources
+
−
** JobLimits | Job Limits
+
−
* Sharing Data
+
−
** SharingData | Methods of Sharing Data
+
−
* SLURM
+
−
** SchedulerIntro | Scheduler Introduction
+
−
** SGEToSLURM | SGE to SLURM Migration Guide
+
−
** KongToLochnessOrStheno-QuickStart | Kong to Lochness or Stheno Migration Quick Start Guide (SGE to SLURM
+
−
** SLURMExampleScripts | SLURM Example Scripts
+
−
* Software
+
−
** AfsandOptSoftware | Software Installed in /afs and in /opt
+
−
** SoftwareModulesAvailable | Modules Available
+
−
** ModulesOnLochness | Modules on Lochness
+
−
** Abaqus | Abaqus
+
−
** Fluent | Fluent
+
−
** Libraries | Libraries
+
−
** Lammps | Lammps
+
−
** Languages | Languages
+
−
** Tecplot | Tecplot
+
−
** NewSoftware | New
+
−
* Specifications
+
−
** ISTResearcherSupport | Material for Inclusion in Funding Proposals
+
−
** https://web-debug.njit.edu/hpc.specs | HPC Specs
+
−
** HPCSpecsExtract | HPC Specs Extract
+
−
** StorageTable | Storage table
+
−
* Surveys
+
−
** https://wiki.hpc.arcs.njit.edu/external/surveys/campchamp/Jan2019.results.pdf | Campus Champions On/off-premise HPC
+
−
** https://wiki.hpc.arcs.njit.edu/external/surveys/HPCsurveySpring2018Results.pdf | HPC & BD Survey Results 12/2018
+
−
** https://wiki.hpc.arcs.njit.edu/external/surveys/HPCsurveySpring2015Results.pdf | HPC & BD Survey Results 09/2015
+
−
** https://wiki.hpc.arcs.njit.edu/external/surveys/HPCsurveySpring2013Results.pdf | HPC & BD Survey Results 03/2013
+
−
** https://wiki.hpc.arcs.njit.edu/external/surveys/HPCStorageandStaffSpring2014.pdf | Researchers' HPC, Storage and Staff Needs 2015-2020
+
−
** https://wiki.hpc.arcs.njit.edu/external/surveys/spring2018/OutsideResource.pdf | Off-premise Resources, Srping 2018
+
−
** https://wiki.hpc.arcs.njit.edu/external/surveys/spring2018/InterBandSciDMZ.pdf | Internet 2 and Science DMZ, Spring 2018
+
−
* Tartan Initiative
+
−
** http://web.njit.edu/topics/hpc/tartan | Tartan HPC Initiative
+
−
* User
+
−
** UserAccess | Access
+
−
** UserEnvironment | Environment
+
−
** RemoteGUI | Remote GUI
+
−
** UserTools | Tools
+
−
* User Contributions
+
−
*Wiki Usage
+
−
** GettingStarted | Getting Started
+
−
** WikiEditingHelp | Wiki Editing Help
+
−
** WikiTextFormatting | Wiki Text Formatting
+
−
** Adding Links to Wiki | Adding Links to Wiki
+
−
** CreatingNewWikiPage | Creating a New Wiki Page
+
−
** Uploading Documents and Images | Uploading Documents and Images
+
  
−
* TOOLBOX
+
This assessment gathers information for inclusion in an NJIT proposal
 +
to NSF 21-528 Campus Cyberinfrastructure (CC*) Program Area 4,
 +
"Campus Computing and the Computing Continuum".
 +
 
 +
The proposal will seek funding for public-access graphics processor unit
 +
(GPU) nodes. If funded, these nodes will be part of the Lochness.njit.edu cluster.
 +
Program Area 4 supports awards up to $400,000 for up to two years.
 +
 
 +
By participating, you will be providing data necessary for this proposal.
 +
 
 +
=== Defs ===
 +
 
 +
In this assessment, <em>IST-managed high performance computing (HPC) resources</em> refers to :
 +
<ul>
 +
<li>Lochness cluster</li>
 +
<li>Kong cluster</li>
 +
<li>Stheno cluster</li>
 +
<li>Non-cluster machines: Antigua, Baozi, Cnrdp, Gorgon, Icl1, Inti, Jimmy, Louise, Phi, Silo100,
 +
Solardb, Thelma</li>
 +
</ul>
 +
 
 +
== 2. Get the data ==
 +
 
 +
2.1 What is your NJIT position? {button}
 +
<ul>
 +
<li>Faculty</li>
 +
<ul>
 +
<li>Tenured</li>
 +
<li>Tenure-track</li>
 +
<li>Non-tenure-track</li>
 +
</ul>
 +
<li>Academic research staff {text box}</li>
 +
<li>Postdoc</li>
 +
</ul>
 +
 
 +
2.1.1 What is your department {dd menu}
 +
 
 +
Newark College of Engineering
 +
<ul>
 +
<li>Biomedical Engineering</li>
 +
<li>Biological and Pharmaceutical Engineering</li>
 +
<li>Civil and Environmental Engineering</li>
 +
<li>Electrical and Computer Engineering</li>
 +
<li>Engineering Technology</li>
 +
<li>Mechanical and Industrial Engineering </li>
 +
<li>Other {text box}</li>
 +
</ul>
 +
 
 +
College of Science and Liberal Arts
 +
<ul>
 +
<li>Aerospace Studies (AFROTC)</li>
 +
<li>Chemistry and Environmental Science</li>
 +
<li>Humanities</li>
 +
<li>Mathematical Sciences</li>
 +
<li>Physics</li>
 +
<li>Federated Department of Biological Sciences</li>
 +
<li>Federated Department of History</li>
 +
<li>Rutgers/NJIT Theatre Arts Program</li>
 +
<li>Other {text box}</li>
 +
</ul>
 +
 
 +
Ying Wu College of Computing
 +
<ul>
 +
<li>Computer Science</li>
 +
<li>Informatics</li>
 +
<li>Other {text box}</li>
 +
</ul>
 +
 
 +
Martin Tuchman School of Management
 +
 
 +
College of Architecture and Design
 +
<ul>
 +
<li>NJ School of Architecture</li>
 +
<li>School of Art and Design</li>
 +
<li>Other {text box}<</li>
 +
</ul>
 +
 
 +
2.2 For approximately how long have you and/or your research group been using IST-managed high performance computing (HPC) resources? {dd menu}
 +
<ul>
 +
<li>Less than 6 months</li>
 +
<li>6+ to 12 months</li>
 +
<li>1+ to 2 years</li>
 +
<li>2+ to 5 years</li>
 +
<li>5+ years</li>
 +
<li>Don't know</li>
 +
</ul>
 +
 
 +
2.3 What is the <strong>general</strong> classification of computations for which you and/or your research
 +
group use IST-managed HPC {check all that apply}
 +
<ul>
 +
<li>Bioinfomatics </li>
 +
<li>Bioinformatics </li>
 +
<li>Biophysics </li>
 +
<li>Computational PDE </li>
 +
<li>Computational biophysics </li>
 +
<li>Computational chemistry </li>
 +
<li>Computational fluid dynamics </li>
 +
<li>Computational physics and chemistry </li>
 +
<li>Condensed matter physics </li>
 +
<li>Electromagnetism, Wave propagation </li>
 +
<li>Granular science </li>
 +
<li>Image forensics </li>
 +
<li>Materials research </li>
 +
<li>Monte Carlo </li>
 +
<li>Neural networks, genetic algorithms </li>
 +
<li>Software verification, static analysis </li>
 +
<li>Statistical analysis </li>
 +
<li>Steganalysis and image forensics </li>
 +
<li>Transportation data analysis </li>
 +
<li>Other {text box} </li>
 +
</ul>
 +
 
 +
2.4 Please provide a <strong>brief, specific</strong> description(s) of the computational work for which you and/or your research group use IST-managed HPC {text box} (goes in 2.3)
 +
 
 +
2.5 For which of the areas you selected in 2.4 are you currently using GPUs, and what software do you use in those areas
 +
 
 +
2.5a If <strong>public-access</strong> GPUs were available, would you use them
 +
<ul>
 +
</li>Yes</li>
 +
<li>No</li>
 +
<li>Don't know</li>
 +
</ul
 +
 
 +
2.6 If <strong>public-access</strong> GPUs were available, to what extent would that enhance your :
 +
<ul>
 +
<li>Research</li>
 +
<ul>
 +
<li>Large</li>
 +
<ul>
 +
<li>Permit larger versions of current models</li>
 +
<li>Permit model types not currently feasible</li>
 +
<li>Other {text box}</li>
 +
</ul>
 +
<li>Moderate</li>
 +
<ul>
 +
<li>Permit larger versions of current models</li>
 +
<li>Permit model types not currently feasible</li>
 +
<li>Other {text box}</li>
 +
</ul>
 +
<li>Small</li>
 +
<ul>
 +
<li>Permit larger versions of current models</li>
 +
<li>Permit model types not currently feasible</li>
 +
<li>Other {text box}</li>
 +
</ul>
 +
<li>No effect/NA</li>
 +
</ul>
 +
 
 +
<li>Teaching</li>
 +
<ul>
 +
<li>Large</li>
 +
<ul>
 +
 +
<li>Permit larger versions of current models</li>
 +
<li>Permit model types not currently feasible</li>
 +
<li>Other {text box}</li>
 +
</ul>
 +
<li>Moderate</li>
 +
<ul>
 +
<li>Permit larger versions of current models</li>
 +
<li>Permit model types not currently feasible</li>
 +
<li>Other {text box}</li>
 +
</ul>
 +
<li>Small</li>
 +
<ul>
 +
<li>Permit larger versions of current models</li>
 +
<li>Permit model types not currently feasible</li>
 +
<li>Other {text box}</li>
 +
</ul>
 +
<li>No effect/NA</li>
 +
 
 +
</ul>
 +
</ul>
 +
 
 +
2.7 If <strong>public-access</strong> GPUs were available, what is your estimate of your use of them for :
 +
<ul>
 +
<li>Research</li>
 +
<ul>
 +
<li>Heavy</li>
 +
<ul>
 +
<li>As discussed ...</li>
 +
</ul>
 +
<li>Moderate</li>
 +
<li>Light</li>
 +
<li>None</li>
 +
<li>Don't know</li>
 +
</ul>
 +
<li>Teaching</li>
 +
<ul>
 +
<li>Heavy</li>
 +
<li>Moderate</li>
 +
<li>Light</li>
 +
<li>None</li>
 +
<li>Don't know</li>
 +
</ul>
 +
</ul>
 +
 +
== 3. Detailed research/teaching GPU info ==
 +
3.1 Please describe the role of GPUs in your research and/or teaching, and
 +
how public-access GPUs would materially support that research and/or teaching {text box, optional}
 +
 
 +
<!--
 +
The final questions are about the device and browser that you used.
 +
 
 +
3.2 What device did you use for this form? {dd menu}
 +
<ul>
 +
<li>Desktop computer</li>
 +
<li>Laptop</li>
 +
<li>Tablet</li>
 +
<li>Smartphone</li>
 +
</ul>
 +
 
 +
3.3 What browser did you use? {dd menu}
 +
<ul>
 +
<li>Chrome</li>
 +
<li>Firefox</li>
 +
<li>Internet Explorer / Edge</li>
 +
<li>Safari</li>
 +
<li>Other</li>
 +
</ul>
 +
 
 +
3.4 Did you encounter any problems with visual presentation and/or navigating the form? {button yes/no}
 +
 
 +
If yes
 +
 
 +
Please describe the visual presentation and/or navigation problem(s) you encountered in taking the assessment {text box}
 +
-->

Revision as of 13:58, 29 January 2021

ForPNSFCCStar 29Jan21-08:58

1. Preamble

This assessment gathers information for inclusion in an NJIT proposal to NSF 21-528 Campus Cyberinfrastructure (CC*) Program Area 4, "Campus Computing and the Computing Continuum".

The proposal will seek funding for public-access graphics processor unit (GPU) nodes. If funded, these nodes will be part of the Lochness.njit.edu cluster. Program Area 4 supports awards up to $400,000 for up to two years.

By participating, you will be providing data necessary for this proposal.

Defs

In this assessment, IST-managed high performance computing (HPC) resources refers to :

  • Lochness cluster
  • Kong cluster
  • Stheno cluster
  • Non-cluster machines: Antigua, Baozi, Cnrdp, Gorgon, Icl1, Inti, Jimmy, Louise, Phi, Silo100, Solardb, Thelma

2. Get the data

2.1 What is your NJIT position? {button}

  • Faculty
    • Tenured
    • Tenure-track
    • Non-tenure-track
  • Academic research staff {text box}
  • Postdoc

2.1.1 What is your department {dd menu}

Newark College of Engineering

  • Biomedical Engineering
  • Biological and Pharmaceutical Engineering
  • Civil and Environmental Engineering
  • Electrical and Computer Engineering
  • Engineering Technology
  • Mechanical and Industrial Engineering
  • Other {text box}

College of Science and Liberal Arts

  • Aerospace Studies (AFROTC)
  • Chemistry and Environmental Science
  • Humanities
  • Mathematical Sciences
  • Physics
  • Federated Department of Biological Sciences
  • Federated Department of History
  • Rutgers/NJIT Theatre Arts Program
  • Other {text box}

Ying Wu College of Computing

  • Computer Science
  • Informatics
  • Other {text box}

Martin Tuchman School of Management

College of Architecture and Design

  • NJ School of Architecture
  • School of Art and Design
  • Other {text box}<

2.2 For approximately how long have you and/or your research group been using IST-managed high performance computing (HPC) resources? {dd menu}

  • Less than 6 months
  • 6+ to 12 months
  • 1+ to 2 years
  • 2+ to 5 years
  • 5+ years
  • Don't know

2.3 What is the general classification of computations for which you and/or your research group use IST-managed HPC {check all that apply}

  • Bioinfomatics
  • Bioinformatics
  • Biophysics
  • Computational PDE
  • Computational biophysics
  • Computational chemistry
  • Computational fluid dynamics
  • Computational physics and chemistry
  • Condensed matter physics
  • Electromagnetism, Wave propagation
  • Granular science
  • Image forensics
  • Materials research
  • Monte Carlo
  • Neural networks, genetic algorithms
  • Software verification, static analysis
  • Statistical analysis
  • Steganalysis and image forensics
  • Transportation data analysis
  • Other {text box}

2.4 Please provide a brief, specific description(s) of the computational work for which you and/or your research group use IST-managed HPC {text box} (goes in 2.3)

2.5 For which of the areas you selected in 2.4 are you currently using GPUs, and what software do you use in those areas

2.5a If public-access GPUs were available, would you use them

    Yes
  • No
  • Don't know

    • </ul

    2.6 If public-access GPUs were available, to what extent would that enhance your :

    • Research
      • Large
        • Permit larger versions of current models
        • Permit model types not currently feasible
        • Other {text box}
      • Moderate
        • Permit larger versions of current models
        • Permit model types not currently feasible
        • Other {text box}
      • Small
        • Permit larger versions of current models
        • Permit model types not currently feasible
        • Other {text box}
      • No effect/NA
    • Teaching
      • Large
        • Permit larger versions of current models
        • Permit model types not currently feasible
        • Other {text box}
      • Moderate
        • Permit larger versions of current models
        • Permit model types not currently feasible
        • Other {text box}
      • Small
        • Permit larger versions of current models
        • Permit model types not currently feasible
        • Other {text box}
      • No effect/NA

    2.7 If public-access GPUs were available, what is your estimate of your use of them for :

    • Research
      • Heavy
        • As discussed ...
      • Moderate
      • Light
      • None
      • Don't know
    • Teaching
      • Heavy
      • Moderate
      • Light
      • None
      • Don't know

    3. Detailed research/teaching GPU info

    3.1 Please describe the role of GPUs in your research and/or teaching, and how public-access GPUs would materially support that research and/or teaching {text box, optional}

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